<html>
<head>
<meta http-equiv="Content-Type" content="text/html;
charset=windows-1252">
</head>
<body>
<br>
Still more:<br>
<br>
I have attached three images.<br>
<br>
1. Showing our Peabody Repository as having 0 Resources<br>
2. Showing a test Resource we manually created in that repository (a
image 1 above really should at least be reporting "1")<br>
3. The output of the Resources List Report for the Peabody
repository showing 140+ Resources<br>
<br>
Reindexing does nothing to reconnect these Resources in the missing
places to their Repository.<br>
<br>
Is there some kind of database maintenance utility I can run to make
this reconnect happen?<br>
<br>
Worried,<br>
<br>
Mark<br>
<pre class="moz-signature" cols="72"><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Mark Cyzyk, M.A., M.L.S.
Library Applications Group
The Sheridan Libraries
The Johns Hopkins University
<a class="moz-txt-link-abbreviated" href="mailto:mcyzyk@jhu.edu">mcyzyk@jhu.edu</a>
Verba volant, scripta manent.
</pre>
<div class="moz-cite-prefix">On 3/3/21 4:29 PM, Mark Cyzyk wrote:<br>
</div>
<blockquote type="cite"
cite="mid:995b771f-198a-59e2-353a-ecbf9df039ce@jhu.edu">
<meta http-equiv="Content-Type" content="text/html;
charset=windows-1252">
<br>
More:<br>
<br>
I turned back on the DB logging, forced the same error, and here
is part of what I captured:<br>
<br>
<blockquote>I, [2021-03-03T12:31:02.401423 #29270] INFO -- :
(0.023387s) SELECT * FROM `note` WHERE (`lang_material_id` IN
(1058))<br>
I, [2021-03-03T12:31:02.406634 #29270] INFO -- : (0.005770s)
SELECT 1 AS `one` FROM `archival_object` INNER JOIN
`enumeration_value` AS `level_enum` ON (`level_enum`.`id` =
`archival_object`.`level_id`) WHERE ((`archival_object`.`id` !=
`archival_object`.`id`) AND (`archival_object`.`component_id` IS
NOT NULL) AND ((`level_enum`.`value` IN ('series')) OR
((`level_enum`.`value` = 'otherlevel') AND (lower(`other_level`)
IN ('accession'))))) LIMIT 1<br>
I, [2021-03-03T12:31:02.407401 #29270] INFO -- : (0.007306s)
SELECT * FROM `instance_do_link_rlshp` WHERE (`instance_id` IN
(238583))<br>
I, [2021-03-03T12:31:02.409280 #29270] INFO -- : (0.005184s)
SELECT * FROM `note` WHERE (`lang_material_id` IN (1059, 2127))<br>
I, [2021-03-03T12:31:02.409613 #29270] INFO -- : (0.002386s)
SELECT * FROM `top_container_link_rlshp` WHERE
(`top_container_id` = 9074)<br>
I, [2021-03-03T12:31:02.410056 #29270] INFO -- : (0.000203s)
SELECT * FROM `subnote_metadata` WHERE (`note_id` IN (205950))<br>
I, [2021-03-03T12:31:02.410913 #29270] INFO -- : (0.012668s)
SELECT * FROM `note` WHERE (`lang_material_id` IN (1140, 2095))<br>
RecordNotFound: /repositories/4/resources/1260<br>
</blockquote>
<br>
Working my way up from the error, this query is returning 0 rows:<br>
<br>
<blockquote> SELECT * FROM `instance_do_link_rlshp` WHERE
(`instance_id` IN (238583))<br>
</blockquote>
<br>
<br>
<pre class="moz-signature" cols="72"><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Mark Cyzyk, M.A., M.L.S.
Library Applications Group
The Sheridan Libraries
The Johns Hopkins University
<a class="moz-txt-link-abbreviated" href="mailto:mcyzyk@jhu.edu" moz-do-not-send="true">mcyzyk@jhu.edu</a>
Verba volant, scripta manent.
</pre>
<div class="moz-cite-prefix">On 3/3/21 10:54 AM, Mark Cyzyk wrote:<br>
</div>
<blockquote type="cite"
cite="mid:a3dbc98f-3f63-ab2f-7681-ddbd3785281a@jhu.edu">
<meta http-equiv="Content-Type" content="text/html;
charset=windows-1252">
<br>
Thanks!<br>
<br>
No FATAL or ERROR now. But there is this:<br>
<br>
<blockquote>
<blockquote>INFO: [collection1] webapp= path=/select
params={df=fullrecord&csv.escape=\&start=0&fq=-exclude_by_default:true&fq=publish:true&fq=types:pui&rows=1&bq=primary_type:resource^100+primary_type:accession^100+primary_type:subject^50+primary_type:agent_person^50+primary_type:agent_corporate_entity^30+primary_type:agent_family^30+&q=(uri:("\/repositories\/4\/resources\/1260"))&qf=title^25+four_part_id^50+fullrecord&pf=four_part_id^50&csv.header=true&csv.encapsulator="&wt=json&facet=true}
hits=0 status=0 QTime=1 <br>
RecordNotFound: /repositories/4/resources/1260<br>
</blockquote>
</blockquote>
<pre class="moz-signature" cols="72"><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Mark Cyzyk, M.A., M.L.S.
Library Applications Group
The Sheridan Libraries
The Johns Hopkins University
<a class="moz-txt-link-abbreviated" href="mailto:mcyzyk@jhu.edu" moz-do-not-send="true">mcyzyk@jhu.edu</a>
Verba volant, scripta manent.
</pre>
<div class="moz-cite-prefix">On 3/3/21 10:30 AM, Blake Carver
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:DM6PR22MB2309E6C06F654CB233F51E0E9F989@DM6PR22MB2309.namprd22.prod.outlook.com">
<meta http-equiv="Content-Type" content="text/html;
charset=windows-1252">
<style type="text/css" style="display:none;">P {margin-top:0;margin-bottom:0;}</style>
<div style="font-family: Calibri, Arial, Helvetica,
sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"> Those
MySQL errors look like the ones already reported and are
probably not causing any problems. </div>
<div style="font-family: Calibri, Arial, Helvetica,
sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"> <br>
</div>
<div style="font-family: Calibri, Arial, Helvetica,
sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"> <a
href="https://archivesspace.atlassian.net/browse/ANW-811?atlOrigin=eyJpIjoiMWJlMDQ4MzJlNjNiNDM0MWFlYzlhNDE5OGQ3NzIzYTYiLCJwIjoiaiJ9"
moz-do-not-send="true">https://archivesspace.atlassian.net/browse/ANW-811?atlOrigin=eyJpIjoiMWJlMDQ4MzJlNjNiNDM0MWFlYzlhNDE5OGQ3NzIzYTYiLCJwIjoiaiJ9</a><br>
</div>
<div style="font-family: Calibri, Arial, Helvetica,
sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"> <br>
</div>
<div style="font-family: Calibri, Arial, Helvetica,
sans-serif; font-size: 12pt; color: rgb(0, 0, 0);"> Turn the
mysql error logging thing off and set the other loglevel
errors to debug and look for any FATAL or ERROR in the logs.</div>
<div>
<div id="Signature">
<div>
<div id="divtagdefaultwrapper" dir="ltr"
style="color:rgb(0,0,0);
background-color:rgb(255,255,255)"> </div>
</div>
</div>
</div>
<hr style="display:inline-block;width:98%" tabindex="-1">
<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt"
face="Calibri, sans-serif" color="#000000"><b>From:</b> <a
class="moz-txt-link-abbreviated"
href="mailto:archivesspace_users_group-bounces@lyralists.lyrasis.org"
moz-do-not-send="true">archivesspace_users_group-bounces@lyralists.lyrasis.org</a>
<a class="moz-txt-link-rfc2396E"
href="mailto:archivesspace_users_group-bounces@lyralists.lyrasis.org"
moz-do-not-send="true"><archivesspace_users_group-bounces@lyralists.lyrasis.org></a>
on behalf of Mark Cyzyk <a class="moz-txt-link-rfc2396E"
href="mailto:mcyzyk@jhu.edu" moz-do-not-send="true"><mcyzyk@jhu.edu></a><br>
<b>Sent:</b> Wednesday, March 3, 2021 10:20 AM<br>
<b>To:</b> Rachel Aileen Searcy <a
class="moz-txt-link-rfc2396E"
href="mailto:rachel.searcy@nyu.edu"
moz-do-not-send="true"><rachel.searcy@nyu.edu></a>;
Archivesspace Users Group <a
class="moz-txt-link-rfc2396E"
href="mailto:archivesspace_users_group@lyralists.lyrasis.org"
moz-do-not-send="true"><archivesspace_users_group@lyralists.lyrasis.org></a><br>
<b>Subject:</b> Re: [Archivesspace_Users_Group] Containers
not being associated with their resources</font>
<div> </div>
</div>
<div><br>
More:<br>
<br>
In our development environment, I configured full error
logging. I then ran one of our queries that is failing,
stopped ASpace, then began scrutiny of archivesspace.out.<br>
<br>
Here are my disturbing findings:<br>
<br>
<blockquote>
<blockquote>E, [2021-03-03T09:47:29.950934 #27625] ERROR
-- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException: Table
'archivesspaceDevelopment.agent_relationship_associative'
doesn't exist: DESCRIBE `agent_relationship_associative`<br>
E, [2021-03-03T09:47:29.960346 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_associative'
doesn't exist: SELECT * FROM
`agent_relationship_associative` LIMIT 1<br>
E, [2021-03-03T09:47:29.968749 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_associative'
doesn't exist: SELECT * FROM
`agent_relationship_associative` LIMIT 1<br>
E, [2021-03-03T09:47:29.984480 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_earlierlater'
doesn't exist: DESCRIBE
`agent_relationship_earlierlater`<br>
E, [2021-03-03T09:47:29.987451 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_earlierlater'
doesn't exist: SELECT * FROM
`agent_relationship_earlierlater` LIMIT 1<br>
E, [2021-03-03T09:47:29.990034 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_earlierlater'
doesn't exist: SELECT * FROM
`agent_relationship_earlierlater` LIMIT 1<br>
E, [2021-03-03T09:47:30.000084 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_parentchild'
doesn't exist: DESCRIBE `agent_relationship_parentchild`<br>
E, [2021-03-03T09:47:30.007362 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_parentchild'
doesn't exist: SELECT * FROM
`agent_relationship_parentchild` LIMIT 1<br>
E, [2021-03-03T09:47:30.011525 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_parentchild'
doesn't exist: SELECT * FROM
`agent_relationship_parentchild` LIMIT 1<br>
E, [2021-03-03T09:47:30.021769 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_subordinatesuperior'
doesn't exist: DESCRIBE
`agent_relationship_subordinatesuperior`<br>
E, [2021-03-03T09:47:30.024655 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_subordinatesuperior'
doesn't exist: SELECT * FROM
`agent_relationship_subordinatesuperior` LIMIT 1<br>
E, [2021-03-03T09:47:30.028291 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_subordinatesuperior'
doesn't exist: SELECT * FROM
`agent_relationship_subordinatesuperior` LIMIT 1<br>
<br>
<br>
<br>
E, [2021-03-03T09:47:30.166299 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table 'archivesspaceDevelopment.container_location'
doesn't exist: DESCRIBE `container_location`<br>
E, [2021-03-03T09:47:30.179378 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table 'archivesspaceDevelopment.container_location'
doesn't exist: SELECT * FROM `container_location` LIMIT
1<br>
E, [2021-03-03T09:47:30.181948 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table 'archivesspaceDevelopment.container_location'
doesn't exist: SELECT * FROM `container_location` LIMIT
1<br>
<br>
<br>
<br>
E, [2021-03-03T09:47:30.575599 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table 'archivesspaceDevelopment.note_bibliography'
doesn't exist: DESCRIBE `note_bibliography`<br>
E, [2021-03-03T09:47:30.579327 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table 'archivesspaceDevelopment.note_bibliography'
doesn't exist: SELECT * FROM `note_bibliography` LIMIT 1<br>
E, [2021-03-03T09:47:30.606147 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table 'archivesspaceDevelopment.note_bibliography'
doesn't exist: SELECT * FROM `note_bibliography` LIMIT 1<br>
E, [2021-03-03T09:47:30.635130 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table 'archivesspaceDevelopment.note_digital_object'
doesn't exist: DESCRIBE `note_digital_object`<br>
E, [2021-03-03T09:47:30.638129 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table 'archivesspaceDevelopment.note_digital_object'
doesn't exist: SELECT * FROM `note_digital_object` LIMIT
1<br>
E, [2021-03-03T09:47:30.645140 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table 'archivesspaceDevelopment.note_digital_object'
doesn't exist: SELECT * FROM `note_digital_object` LIMIT
1<br>
E, [2021-03-03T09:47:30.651197 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table 'archivesspaceDevelopment.note_index' doesn't
exist: DESCRIBE `note_index`E,
[2021-03-03T09:47:29.960346 #27625] ERROR -- :
Java::ComMysqlJdbcExceptionsJdbc4::MySQLSyntaxErrorException:
Table
'archivesspaceDevelopment.agent_relationship_associative'
doesn't exist: SELECT * FROM
`agent_relationship_associative` LIMIT 1<br>
</blockquote>
</blockquote>
<br>
<br>
I took a look directly in the database and these tables are
indeed missing.<br>
<br>
At this point, I am stumped. I don't understand why, with
these tables missing, one of our three Repositories would be
working just fine -- the other two, not so much. How could
whole tables get deleted from our ASpace? I'm guessing this
happened a couple weeks ago.<br>
<br>
Any advice greatly appreciated,<br>
<br>
Mark<br>
<pre class="x_moz-signature" cols="72"><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Mark Cyzyk, M.A., M.L.S.
Library Applications Group
The Sheridan Libraries
The Johns Hopkins University
<a class="x_moz-txt-link-abbreviated" href="mailto:mcyzyk@jhu.edu" moz-do-not-send="true">mcyzyk@jhu.edu</a>
Verba volant, scripta manent.
</pre>
<div class="x_moz-cite-prefix">On 3/1/21 5:18 PM, Mark Cyzyk
wrote:<br>
</div>
<blockquote type="cite"><br>
Thanks, Rachel!<br>
<br>
I've now completely reindexed everything (a "hard
reindex") and still no joy. <br>
<br>
I am noticing there is no "location.dat" file in our
/indexer_pui_state/:<br>
<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 3_archival_object.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 3_classification.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 3_classification_term.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 3_digital_object_component.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 3_digital_object.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 3_resource.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 4_archival_object.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 4_classification.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 4_classification_term.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 4_digital_object_component.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 4_digital_object.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 4_resource.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 5_archival_object.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 5_classification.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 5_classification_term.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 5_digital_object_component.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 5_digital_object.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 5_resource.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 _deletes_deletes.dat<br>
-rw-r--r--. 1 archivesspace archivesspace 11 Mar 1
17:13 repositories_repositories.dat<br>
<br>
Should there be?<br>
<br>
Our two problem repositories here are 4 and 5. The Staff
interface reports "0" Resources for both. Yet when I run
the Resources List Report I do indeed get back a report
with Resources. Puzzling.<br>
<br>
It's like something in the backend DB has become
disconnected, but just for these two repositories. Not
sure how.<br>
<br>
If anyone has any suggestions, I would greatly appreciate
hearing them!<br>
<br>
Mark<br>
<br>
<pre class="x_moz-signature" cols="72"><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Mark Cyzyk, M.A., M.L.S.
Library Applications Group
The Sheridan Libraries
The Johns Hopkins University
<a class="x_moz-txt-link-abbreviated" href="mailto:mcyzyk@jhu.edu" moz-do-not-send="true">mcyzyk@jhu.edu</a>
Verba volant, scripta manent.
</pre>
<div class="x_moz-cite-prefix">On 2/24/21 11:11 AM, Rachel
Aileen Searcy wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">
<div>Hi Mark</div>
<div><br>
</div>
We ran into a similar issue recently, where newly
created containers were not being properly associated
with the resource record, and updates to locations or
barcodes were not showing up in searches or the Manage
Top Containers view. We looked at the timestamp files
for the indexer, and noticed that there was no
location.dat file. We performed a <a
href="https://github.com/archivesspace/tech-docs/blob/master/administration/indexes.md"
moz-do-not-send="true"> soft re-index</a>, after
which our containers, barcodes, and locations resumed
behaving as expected. We also have recurring monthly
system restarts (which will now include a soft
re-index going forward) built into our schedule, which
seems to help with maintaining overall performance.<br>
<div><br>
</div>
<div>I'm not sure if this is exactly what you're
experiencing, but I hope it's helpful. Take care,</div>
<div>Rachel</div>
</div>
<br>
<div class="x_gmail_quote">
<div dir="ltr" class="x_gmail_attr">On Mon, Feb 22,
2021 at 5:45 PM Mark Cyzyk <<a
href="mailto:mcyzyk@jhu.edu"
moz-do-not-send="true">mcyzyk@jhu.edu</a>>
wrote:<br>
</div>
<blockquote class="x_gmail_quote" style="margin:0px
0px 0px 0.8ex; border-left:1px solid
rgb(204,204,204); padding-left:1ex"> <br>
Dear ASpace list,<br>
<br>
From one of our Archivists:<br>
<br>
> When I create a new container, either manually
or by spreadsheet <br>
> ingest, the container appears properly in the
Instance field of the <br>
> record. From the resource, I can open the
container record and it <br>
> appears to be associated with the resource
correctly. However, in the <br>
> container management module, when I search for
all containers <br>
> associated with the collection, the recently
created container is not <br>
> listed. If I search for the new container's
barcode, the container <br>
> appears in the search results but with no
associated resource. I can <br>
> also locate the new containers by searching for
unassociated containers.<br>
<br>
It seems like some linkage is not happening here.<br>
<br>
More, this is only happening in his Repository, not
our other, larger <br>
Repository.<br>
<br>
Has anyone else run into this?<br>
<br>
Mark<br>
<br>
-- <br>
<><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><br>
Mark Cyzyk, M.A., M.L.S.<br>
Library Applications Group<br>
The Sheridan Libraries<br>
The Johns Hopkins University<br>
<a href="mailto:mcyzyk@jhu.edu" target="_blank"
moz-do-not-send="true">mcyzyk@jhu.edu</a><br>
<br>
Verba volant, scripta manent.<br>
<br>
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<div>Rachel Searcy<br>
Accessioning Archivist, Archival
Collections Management<br>
<div><span
style="font-size:12.8px">New
York University Libraries</span><br>
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<div><a value="+12129982631"
moz-do-not-send="true">212.998.2539</a> |
<a
href="mailto:rachel.searcy@nyu.edu"
target="_blank"
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rachel.searcy@nyu.edu</a> <br>
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<div>My pronouns are she/her/hers</div>
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